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Paenibacillus populi sp. nov., a novel bacterium isolated from the rhizosphere of Populus alba.

Identifieur interne : 001C05 ( Main/Exploration ); précédent : 001C04; suivant : 001C06

Paenibacillus populi sp. nov., a novel bacterium isolated from the rhizosphere of Populus alba.

Auteurs : Tong-Yan Han [République populaire de Chine] ; Xiao-Mei Tong ; Yan-Wei Wang ; Hui-Min Wang ; Xiao-Rong Chen ; De-Long Kong ; Xiang Guo ; Zhi-Yong Ruan

Source :

RBID : pubmed:26133115

Descripteurs français

English descriptors

Abstract

A novel aerobic bacterium, designated strain LAM0705(T), was isolated from the rhizosphere of Populus alba in the Peking University Third Hospital. Cells of strain LAM0705(T) were observed to be Gram-stain positive, motile, spore-forming and rod-shaped. The optimal temperature and pH for growth were found to be 30 °C and pH 7.5, respectively. Strain LAM0705(T) was found to be able to grow in the presence 0-5 % NaCl (w/v) (optimum 1.0 %). The major fatty acids of strain LAM0705(T) were identified as anteiso-C15:0, C16:0 and iso-C16:0. The dominant polar lipids were found to consist of diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol. The cell wall peptidoglycan of strain LAM0705(T) was found to contain meso-diaminopimelic acid. The predominant menaquinone was identified as MK-7. The G+C content of genomic DNA was found to be 48 mol% when determined by the T m method. The 16S rRNA gene sequence similarity analysis indicated that strain LAM0705(T) is closely related to Paenibacillus agaridevorans DSM 1355(T) and Paenibacillus thailandensis KCTC 13043(T) with 97.8 and 96.1 % sequence similarity, respectively. The DNA-DNA hybridization value between strain LAM0705(T) and P. agaridevorans DSM 1355(T) was 47 ± 0.8 %. On the basis of its phenotypic, phylogenetic and chemotaxonomic characteristics, strain LAM0705(T) is concluded to represent a novel species of the genus Paenibacillus, for which the name Paenibacillus populi sp. nov. is proposed. The type strain is LAM0705(T) (=ACCC 06427(T) = JCM 19843(T)).

DOI: 10.1007/s10482-015-0521-4
PubMed: 26133115


Affiliations:


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Le document en format XML

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<term>Base Composition (MeSH)</term>
<term>Cell Wall (chemistry)</term>
<term>China (MeSH)</term>
<term>Cluster Analysis (MeSH)</term>
<term>Cytosol (chemistry)</term>
<term>DNA, Bacterial (chemistry)</term>
<term>DNA, Bacterial (genetics)</term>
<term>DNA, Ribosomal (chemistry)</term>
<term>DNA, Ribosomal (genetics)</term>
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<term>Locomotion (MeSH)</term>
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<term>Paenibacillus (genetics)</term>
<term>Paenibacillus (isolation & purification)</term>
<term>Paenibacillus (physiology)</term>
<term>Peptidoglycan (analysis)</term>
<term>Phospholipids (analysis)</term>
<term>Phylogeny (MeSH)</term>
<term>Populus (MeSH)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Rhizosphere (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Sodium Chloride (metabolism)</term>
<term>Soil Microbiology (MeSH)</term>
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<term>Temperature (MeSH)</term>
<term>Vitamin K 2 (analysis)</term>
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<term>Acides gras (analyse)</term>
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<term>Analyse de séquence d'ADN (MeSH)</term>
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<term>Chine (MeSH)</term>
<term>Chlorure de sodium (métabolisme)</term>
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<term>Concentration en ions d'hydrogène (MeSH)</term>
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<term>Populus (MeSH)</term>
<term>Rhizosphère (MeSH)</term>
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<term>Techniques de typage bactérien (MeSH)</term>
<term>Température (MeSH)</term>
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<term>Paenibacillus</term>
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<term>ADN ribosomique</term>
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<term>Hydrogen-Ion Concentration</term>
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<term>Molecular Sequence Data</term>
<term>Nucleic Acid Hybridization</term>
<term>Phylogeny</term>
<term>Populus</term>
<term>Rhizosphere</term>
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<term>Temperature</term>
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<term>Composition en bases nucléiques</term>
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<term>Données de séquences moléculaires</term>
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<term>Température</term>
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<div type="abstract" xml:lang="en">A novel aerobic bacterium, designated strain LAM0705(T), was isolated from the rhizosphere of Populus alba in the Peking University Third Hospital. Cells of strain LAM0705(T) were observed to be Gram-stain positive, motile, spore-forming and rod-shaped. The optimal temperature and pH for growth were found to be 30 °C and pH 7.5, respectively. Strain LAM0705(T) was found to be able to grow in the presence 0-5 % NaCl (w/v) (optimum 1.0 %). The major fatty acids of strain LAM0705(T) were identified as anteiso-C15:0, C16:0 and iso-C16:0. The dominant polar lipids were found to consist of diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol. The cell wall peptidoglycan of strain LAM0705(T) was found to contain meso-diaminopimelic acid. The predominant menaquinone was identified as MK-7. The G+C content of genomic DNA was found to be 48 mol% when determined by the T m method. The 16S rRNA gene sequence similarity analysis indicated that strain LAM0705(T) is closely related to Paenibacillus agaridevorans DSM 1355(T) and Paenibacillus thailandensis KCTC 13043(T) with 97.8 and 96.1 % sequence similarity, respectively. The DNA-DNA hybridization value between strain LAM0705(T) and P. agaridevorans DSM 1355(T) was 47 ± 0.8 %. On the basis of its phenotypic, phylogenetic and chemotaxonomic characteristics, strain LAM0705(T) is concluded to represent a novel species of the genus Paenibacillus, for which the name Paenibacillus populi sp. nov. is proposed. The type strain is LAM0705(T) (=ACCC 06427(T) = JCM 19843(T)).</div>
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<AbstractText>A novel aerobic bacterium, designated strain LAM0705(T), was isolated from the rhizosphere of Populus alba in the Peking University Third Hospital. Cells of strain LAM0705(T) were observed to be Gram-stain positive, motile, spore-forming and rod-shaped. The optimal temperature and pH for growth were found to be 30 °C and pH 7.5, respectively. Strain LAM0705(T) was found to be able to grow in the presence 0-5 % NaCl (w/v) (optimum 1.0 %). The major fatty acids of strain LAM0705(T) were identified as anteiso-C15:0, C16:0 and iso-C16:0. The dominant polar lipids were found to consist of diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol. The cell wall peptidoglycan of strain LAM0705(T) was found to contain meso-diaminopimelic acid. The predominant menaquinone was identified as MK-7. The G+C content of genomic DNA was found to be 48 mol% when determined by the T m method. The 16S rRNA gene sequence similarity analysis indicated that strain LAM0705(T) is closely related to Paenibacillus agaridevorans DSM 1355(T) and Paenibacillus thailandensis KCTC 13043(T) with 97.8 and 96.1 % sequence similarity, respectively. The DNA-DNA hybridization value between strain LAM0705(T) and P. agaridevorans DSM 1355(T) was 47 ± 0.8 %. On the basis of its phenotypic, phylogenetic and chemotaxonomic characteristics, strain LAM0705(T) is concluded to represent a novel species of the genus Paenibacillus, for which the name Paenibacillus populi sp. nov. is proposed. The type strain is LAM0705(T) (=ACCC 06427(T) = JCM 19843(T)).</AbstractText>
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</MeshHeading>
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<DescriptorName UI="D056507" MajorTopicYN="N">Paenibacillus</DescriptorName>
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<DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName>
<QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName>
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<MeshHeading>
<DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
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<MeshHeading>
<DescriptorName UI="D032107" MajorTopicYN="Y">Populus</DescriptorName>
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<MeshHeading>
<DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
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<DescriptorName UI="D013696" MajorTopicYN="N">Temperature</DescriptorName>
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<DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName>
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</MedlineCitation>
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<History>
<PubMedPubDate PubStatus="received">
<Year>2015</Year>
<Month>03</Month>
<Day>25</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2015</Year>
<Month>06</Month>
<Day>27</Day>
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<Year>2015</Year>
<Month>7</Month>
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<name sortKey="Chen, Xiao Rong" sort="Chen, Xiao Rong" uniqKey="Chen X" first="Xiao-Rong" last="Chen">Xiao-Rong Chen</name>
<name sortKey="Guo, Xiang" sort="Guo, Xiang" uniqKey="Guo X" first="Xiang" last="Guo">Xiang Guo</name>
<name sortKey="Kong, De Long" sort="Kong, De Long" uniqKey="Kong D" first="De-Long" last="Kong">De-Long Kong</name>
<name sortKey="Ruan, Zhi Yong" sort="Ruan, Zhi Yong" uniqKey="Ruan Z" first="Zhi-Yong" last="Ruan">Zhi-Yong Ruan</name>
<name sortKey="Tong, Xiao Mei" sort="Tong, Xiao Mei" uniqKey="Tong X" first="Xiao-Mei" last="Tong">Xiao-Mei Tong</name>
<name sortKey="Wang, Hui Min" sort="Wang, Hui Min" uniqKey="Wang H" first="Hui-Min" last="Wang">Hui-Min Wang</name>
<name sortKey="Wang, Yan Wei" sort="Wang, Yan Wei" uniqKey="Wang Y" first="Yan-Wei" last="Wang">Yan-Wei Wang</name>
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<country name="République populaire de Chine">
<noRegion>
<name sortKey="Han, Tong Yan" sort="Han, Tong Yan" uniqKey="Han T" first="Tong-Yan" last="Han">Tong-Yan Han</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

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